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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9665984_9666097_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9665984 - 9666097
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAG
U12 Branch Point Sequence:
GCAGCAGGAGCC
Flanking Amino Acid:
HENFGLMPVNRTSRKEPVLN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
36
-0.8
1.5
37
40.7
Major PPT
86.8
0.83
0.7
81.2
23.8
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
33.2
-1.2
2.1
38.02
39.6

Associated Gene:

Gene:
FMO3
Ensembl Gene ID:
ENSAPLG00000002757
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002820
9663906 - 9670982
7077