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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9666298_9666376_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9666298 - 9666376
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GGCTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
GGTGCCTCACCC
Flanking Amino Acid:
AVELSTVASQVYLSSRSGSW
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
61.8
0.27
0.9
50.6
39.3
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
48.4
-0.1
2
60.25
44.5

Associated Gene:

Gene:
FMO3
Ensembl Gene ID:
ENSAPLG00000002757
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002820
9663906 - 9670982
7077