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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9667554_9667773_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9667554 - 9667773
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTGTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
ACTTCCCAAACC
Flanking Amino Acid:
FDLLRHIRFKTVVTNIRKRP
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
69.4
0.44
1.1
75.7
33.2
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
55.1
0.14
2
69.38
42

Associated Gene:

Gene:
FMO3
Ensembl Gene ID:
ENSAPLG00000002757
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002820
9663906 - 9670982
7077