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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9667963_9669769_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9667963 - 9669769
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGAG
5'SS Class:
major
3'SS Sequence:
TGTACTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCCCTCTAACC
Flanking Amino Acid:
EDIGGLWRYTEHVEEGRASI
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.4
38.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
76.3
0.59
0.9
66.5
40.5
Minor 5ss
24.8
-2.9
3.1
30
43
Minor BPS
55.2
0.14
1.7
64.28
41.5

Associated Gene:

Gene:
FMO3
Ensembl Gene ID:
ENSAPLG00000002757
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002820
9663906 - 9670982
7077