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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9669908_9670007_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9669908 - 9670007
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTCTCCCCACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
68.4
0.41
0.8
61.3
27.5
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
45.7
-0.3
2.1
59.96
45.8

Associated Gene:

Gene:
FMO3
Ensembl Gene ID:
ENSAPLG00000002757
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002820
9663906 - 9670982
7077