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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_968102_971167_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
968102 - 971167
Intron Length:
3066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAGCT
5'SS Class:
major
3'SS Sequence:
CTTTATGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATGC
Flanking Amino Acid:
VRKKKEKQVKELVRKGIPHH
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
65.3
38.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
76.1
0.59
0.9
73.9
36.5
Minor 5ss
31.7
-2.1
3.6
48.3
47.3
Minor BPS
50.6
-0
1.9
61.09
45

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033885
913107 - 975964
62858
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000043084
929293 - 976526
47234