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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_968887_971167_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
968887 - 971167
Intron Length:
2281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAGCT
5'SS Class:
major
3'SS Sequence:
TCAATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAATT
Flanking Amino Acid:
MYGKRKKSKLRSSNKTTSYL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
65.3
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.9
80.5
36.7
Minor 5ss
31.7
-2.1
3.6
48.3
47.3
Minor BPS
69.2
0.68
1.8
89.82
34.1

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026338
913107 - 975964
62858