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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9695978_9700486_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9695978 - 9700486
Intron Length:
4509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCACCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTCTCTCCACC
Flanking Amino Acid:
YLSWGTASPYSAMATYSATC
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
68.6
0.42
0.8
61.6
28.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
53.1
0.08
2
71.76
39.3

Associated Gene:

Gene:
PRRX1
Ensembl Gene ID:
ENSAPLG00000029163
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024849
9694914 - 9730508
35595
ENSAPLT00000032613
9694914 - 9730738
35825