About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_971358_975734_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
971358 - 975734
Intron Length:
4377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
ELLAKLEEQNRLLETDSKSL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
70.9
35
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.72
0.8
77
31.6
Minor 5ss
26
-2.8
3
31.8
42.6
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000043084
929293 - 976526
47234
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000033885
913107 - 975964
62858
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234