Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9757653_9759297_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9757653 - 9759297

Intron Length:

1645

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTTAGTAAG

5'SS Class:

major

3'SS Sequence:

TGTGAATGAGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TTAATTTTGACC

Flanking Amino Acid:

NAKVEKKKVELQEKSRWEIL

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.2

0.34

1.2

64.8

40.6

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

57.9

0.18

1.1

52.1

45.8

Minor 5ss

-1.8

2.6

41.4

38.8

Minor BPS

63.7

0.41

1.2

70.44

34.8

Associated Gene:

Gene:

GORAB

Ensembl Gene ID:

ENSAPLG00000030796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024871

9751571 - 9760977

9407

ENSAPLT00000022431

9751571 - 9760188

8618