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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9837225_9842532_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9837225 - 9842532
Intron Length:
5308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAATAATT
Flanking Amino Acid:
SREFLRKFVGGVGKAGTNRA
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74
38.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
30
-2.3
2.9
32.9
41.9
Minor BPS
49.3
0.03
2
77.27
38.4

Associated Gene:

Gene:
METTL11B
Ensembl Gene ID:
ENSAPLG00000019259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046720
9832926 - 9858382
25457
ENSAPLT00000026715
9832829 - 9849564
16736