About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9842709_9849320_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
9842709 - 9849320

Intron Length:
6612

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTGAGTAAC

5'SS Class:
strong_major

3'SS Sequence:
TATCTGCCTACAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GATTTAT

U12 Branch Point Sequence:
CTGTCATTAACA

Flanking Amino Acid:
YLYLLEKLPLVKLYALTSQV

Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.4
0.79
0.9
77.5
32.9

Major BPS
70.9
0.52
1.2
63.7
43.9

Major PPT
76.9
0.61
0.9
69.4
36.6

Minor 5ss
30.1
-2.3
2.6
28.4
36

Minor BPS
70.3
0.63
1.6
76.47
40.7

Associated Gene:

Gene:
METTL11B

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9832829 - 9849564
16736