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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9845642_9849320_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9845642 - 9849320
Intron Length:
3679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCCTGATGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.2
0.63
0.9
73.5
36
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
52.9
0.07
2
69.77
41.5

Associated Gene:

Gene:
METTL11B
Ensembl Gene ID:
ENSAPLG00000019259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046720
9832926 - 9858382
25457