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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9868745_9869935_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9868745 - 9869935
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTAAGTTAACT
Flanking Amino Acid:
QNRRDASAGKEKKEKSSKPK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.5
0.73
0.7
77.5
29.8
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
53.9
0.2
2.3
77.66
44.4

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000026486
9862934 - 9929563
66630
ENSAPLT00000012698
9868522 - 9912990
44469
ENSAPLT00000041245
9862934 - 9912990
50057
ENSAPLT00000002400
9862934 - 9929563
66630
ENSAPLT00000035522
9862934 - 9929563
66630