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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9869992_9870482_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9869992 - 9870482
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGACTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCCTTATGA
Flanking Amino Acid:
KDPPPFEGMEIDEVANINDM
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.9
0.54
1
69.7
41.3
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
63.8
0.43
1.9
76.09
41.2

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000026486
9862934 - 9929563
66630
ENSAPLT00000012698
9868522 - 9912990
44469
ENSAPLT00000041245
9862934 - 9912990
50057
ENSAPLT00000002400
9862934 - 9929563
66630
ENSAPLT00000035522
9862934 - 9929563
66630