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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9870625_9871995_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9870625 - 9871995
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACAAGG
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CTCATCTAAATC
Flanking Amino Acid:
PDNLEELLINETALGALARV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
57.7
47
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
87.7
0.85
0.7
85.6
29.1
Minor 5ss
38.9
-1.2
2.9
50
46.1
Minor BPS
49.6
-0
1.7
57.66
42.1

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002400
9862934 - 9929563
66630
ENSAPLT00000035522
9862934 - 9929563
66630
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000026486
9862934 - 9929563
66630
ENSAPLT00000012698
9868522 - 9912990
44469