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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9872096_9873024_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9872096 - 9873024
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCTTCAATG
Flanking Amino Acid:
NIIYIFFCFSSFSQFHGIIT
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.3
0.66
0.9
74.6
33.9
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
70.3
0.5
1.5
75.4
37

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002400
9862934 - 9929563
66630
ENSAPLT00000035522
9862934 - 9929563
66630
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000026486
9862934 - 9929563
66630
ENSAPLT00000012698
9868522 - 9912990
44469