Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9877050_9894570_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9877050 - 9894570

Intron Length:

17521

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ATA|GCAAAGCTG

5'SS Class:

weak_major

3'SS Sequence:

TGTTTCTTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

AATGGCTTAAAT

Flanking Amino Acid:

CSNTDISAGILMKMLFECPD

Intron Amino Acid Position:

412

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.4

0.13

1.3

55.5

41.6

Major BPS

0.6

1.2

75.9

36.3

Major PPT

79.8

0.67

77.1

37.1

Minor 5ss

25.2

-2.8

4.3

39.5

41.6

Minor BPS

54.7

0.22

72.93

43.5

Associated Gene:

Gene:

KIFAP3

Ensembl Gene ID:

ENSAPLG00000002383

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026719

9862934 - 9929563

66630