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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9897442_9897831_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9897442 - 9897831
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
TTTCCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTCCCTTTACA
Flanking Amino Acid:
IIPALIELLNAQQEDDEFVC
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
66
40
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89.3
0.88
0.6
83.8
24.4
Minor 5ss
48.2
-0.2
2.5
64.7
41.7
Minor BPS
75.8
0.81
1.6
85.53
33

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041245
9862934 - 9912990
50057
ENSAPLT00000035522
9862934 - 9929563
66630
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000012698
9868522 - 9912990
44469