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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9897442_9899069_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9897442 - 9899069
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
AGTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTATCCTTAACA
Flanking Amino Acid:
IIPALIELLNEAPAYLIDLM
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
66
40
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
82.8
0.74
0.9
73.9
41.1
Minor 5ss
48.2
-0.2
2.5
64.7
41.7
Minor BPS
91.5
1.3
0.8
92.7
26.4

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026486
9862934 - 9929563
66630