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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9897931_9899069_F

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
9897931 - 9899069
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATCTTTT
5'SS Class:
strong_minor
3'SS Sequence:
AGTTTCTTTCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTATCCTTAACA
Flanking Amino Acid:
ATRDVIIKETQAPAYLIDLM
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.4
71.4
41.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
82.8
0.74
0.9
73.9
41.1
Minor 5ss
81.9
1.08
1.4
83
27.8
Minor BPS
91.5
1.3
0.8
92.7
26.4

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035522
9862934 - 9929563
66630
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000012698
9868522 - 9912990
44469
ENSAPLT00000002400
9862934 - 9929563
66630
ENSAPLT00000041245
9862934 - 9912990
50057