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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9912495_9929454_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9912495 - 9929454
Intron Length:
16960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAACCTTTAATT
Flanking Amino Acid:
DLVGQHPFSSSIGVDGFGQT
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
67.7
0.63
1.2
74.19
36.2

Associated Gene:

Gene:
KIFAP3
Ensembl Gene ID:
ENSAPLG00000002383
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035522
9862934 - 9929563
66630
ENSAPLT00000026719
9862934 - 9929563
66630
ENSAPLT00000026486
9862934 - 9929563
66630
ENSAPLT00000002400
9862934 - 9929563
66630