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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_992508_993503_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
992508 - 993503
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCTAG
5'SS Class:
major
3'SS Sequence:
TGCTCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
GATGTCTTAACT
Flanking Amino Acid:
AVDGGLSIPHSTKRFPGYDS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
40.1
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
80.5
0.69
0.8
75.3
33.2
Minor 5ss
43.3
-0.7
2.9
55.5
48.6
Minor BPS
72.7
0.79
1.4
81.59
39.7

Associated Gene:

Gene:
RPL5
Ensembl Gene ID:
ENSAPLG00000015966
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016676
991535 - 996315
4781