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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9950949_9951253_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9950949 - 9951253
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTAACTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTTACTTAACT
Flanking Amino Acid:
MARELESTGEPLAKRACHPP
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.7
32.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.3
0.5
0.9
65
35.9
Minor 5ss
35.2
-1.7
3.5
49.1
47.1
Minor BPS
82.2
1.09
1.3
94.33
32.4

Associated Gene:

Gene:
C1orf112
Ensembl Gene ID:
ENSAPLG00000006447
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006702
9950763 - 9969693
18931