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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9951368_9952171_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9951368 - 9952171
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GCTCGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
CTTTAGTTACCT
Flanking Amino Acid:
KNKVVNFMAKVRQAEETTEA
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
67.7
0.4
0.9
57.6
38.6
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
48.8
-0
2.5
76.43
46

Associated Gene:

Gene:
C1orf112
Ensembl Gene ID:
ENSAPLG00000006447
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006702
9950763 - 9969693
18931