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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9952253_9952580_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9952253 - 9952580
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TGTTACCTAATA
Flanking Amino Acid:
ALEAFRHFAEETIHEDVVPQ
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
80
0.67
0.9
73.1
41.2
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
59.9
0.31
1.9
74.3
36.9

Associated Gene:

Gene:
C1orf112
Ensembl Gene ID:
ENSAPLG00000006447
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006702
9950763 - 9969693
18931