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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_995460_996159_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
995460 - 996159
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TATGTCATACCC
Flanking Amino Acid:
KKPKREVKKKRVNSSKMSLA
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
48.3
-0.1
2
63.81
41.7

Associated Gene:

Gene:
RPL5
Ensembl Gene ID:
ENSAPLG00000015966
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016676
991535 - 996315
4781