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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9955865_9956953_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9955865 - 9956953
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAACT
Flanking Amino Acid:
MLFLMAPDHQVEFAHKFLPE
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.8
77.2
30.4
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
64.7
0.54
1.7
84.57
35.1

Associated Gene:

Gene:
C1orf112
Ensembl Gene ID:
ENSAPLG00000006447
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006702
9950763 - 9969693
18931