About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9957044_9957330_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9957044 - 9957330
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTGATTTAATT
Flanking Amino Acid:
THHCVVIAQLIKSWPNECYQ
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
1
71.2
38.3
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
61.2
0.43
1.6
76.08
41.4

Associated Gene:

Gene:
C1orf112
Ensembl Gene ID:
ENSAPLG00000006447
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006702
9950763 - 9969693
18931