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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9959654_9960475_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9959654 - 9960475
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CAAAATTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CACTTCAAAACA
Flanking Amino Acid:
FMEQVLSDNLGLPPEQQLPQ
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
66.3
0.37
1
57.7
42.4
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
46.9
-0.2
1.9
56.48
42.9

Associated Gene:

Gene:
C1orf112
Ensembl Gene ID:
ENSAPLG00000006447
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006702
9950763 - 9969693
18931