Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9964690_9965065_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9964690 - 9965065

Intron Length:

376

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATATGTG

5'SS Class:

major

3'SS Sequence:

ATTTCCTTCACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

ATTTCCTTCACA

Flanking Amino Acid:

AEDNITDMVSVIHTVLEICS

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

71.2

38.9

Major BPS

84.7

0.86

74.3

40.7

Major PPT

82.4

0.73

0.8

76.6

31.3

Minor 5ss

41.7

-0.9

3.2

57.3

47.4

Minor BPS

77.1

0.85

1.7

85.87

33.2

Associated Gene:

Gene:

C1orf112

Ensembl Gene ID:

ENSAPLG00000006447

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006702

9950763 - 9969693

18931

ENSAPLT00000020831

9962965 - 9969693

6729