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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9976222_9978401_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9976222 - 9978401
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTCTAATAAACT
Flanking Amino Acid:
KKIRVFGLSTGYGKADHSVT
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
48.6
-0
2.1
70.99
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006245
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006471
9976129 - 9979045
2917