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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9985513_9995003_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9985513 - 9995003
Intron Length:
9491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCA
5'SS Class:
major
3'SS Sequence:
TGATCTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTTCCTTTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
63.8
36.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
77.1
0.61
0.9
69.2
41.5
Minor 5ss
26.3
-2.7
3.2
28.7
38.5
Minor BPS
67
0.52
1.2
71.73
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005910
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046599
9985444 - 10003101
17658