About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9995071_9995495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9995071 - 9995495
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTTTGCCATCT
Flanking Amino Acid:
CLWFLSLLAYGLTILEGVNC
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
87.6
0.85
0.8
80.3
37.3
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
42.4
-0.5
2.5
72.42
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005910
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006138
9995004 - 10003101
8098
ENSAPLT00000046599
9985444 - 10003101
17658
ENSAPLT00000046088
9995004 - 10003101
8098
ENSAPLT00000039634
9995004 - 10003101
8098
ENSAPLT00000018526
9995004 - 10003101
8098