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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9996747_9997682_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9996747 - 9997682
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTGTCTTTTATG
Flanking Amino Acid:
PGFYGRNCELAVTCPAPSIA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
72.2
39.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.5
0.78
0.8
81.3
36.2
Minor 5ss
40.5
-1.1
3.3
52.3
45.8
Minor BPS
54.7
0
1.7
58.31
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005910
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046088
9995004 - 10003101
8098
ENSAPLT00000039634
9995004 - 10003101
8098
ENSAPLT00000018526
9995004 - 10003101
8098
ENSAPLT00000006138
9995004 - 10003101
8098
ENSAPLT00000046599
9985444 - 10003101
17658