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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9997866_9998309_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9997866 - 9998309
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTC
5'SS Class:
major
3'SS Sequence:
CTTATGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTAGAGGTAACA
Flanking Amino Acid:
NWSEEQPSCEAVTCPALTPI
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
73.4
38.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.8
0.69
0.9
77
37.1
Minor 5ss
49.2
-0
2.8
70.3
40.3
Minor BPS
41.7
-0.6
2.7
60.8
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005910
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046088
9995004 - 10003101
8098
ENSAPLT00000039634
9995004 - 10003101
8098
ENSAPLT00000018526
9995004 - 10003101
8098
ENSAPLT00000006138
9995004 - 10003101
8098