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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1005368_1006191_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1005368 - 1006191
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTGC
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTTTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATTAC
U12 Branch Point Sequence:
TTTTGCTTTATT
Flanking Amino Acid:
IIHQQVELLEAILGTETCSK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
57.4
42.6
Major BPS
53.5
0.09
1.1
45.7
36.7
Major PPT
77.9
0.63
0.9
78.5
34.7
Minor 5ss
48.7
-0.1
2.9
67.9
43.4
Minor BPS
65.1
0.56
2.1
87.87
37.8

Associated Gene:

Gene:
PLSCR5
Ensembl Gene ID:
ENSAPLG00000003366
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003427
1005268 - 1008799
3532