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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1007790_1008760_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1007790 - 1008760
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CCTTCCTTACAA
Flanking Amino Acid:
AVMIGACFLIDLMFFENSLD
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.7
0.73
0.8
78.1
35.3
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
60
0.31
1.8
68.09
44.4

Associated Gene:

Gene:
PLSCR5
Ensembl Gene ID:
ENSAPLG00000003366
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003427
1005268 - 1008799
3532