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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10081645_10081827_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10081645 - 10081827
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
GTGCCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ATTTCTGTGATT
Flanking Amino Acid:
AAPRQLSIIPGIAVSTREKP
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.3
0.53
0.9
65.8
35.9
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
58.8
0.36
2
80.58
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007941
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008240
10081515 - 10088252
6738