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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10083232_10083944_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10083232 - 10083944
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGGCCCTCACA
Flanking Amino Acid:
TKLLSANKPEVTRQVTKVLV
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.8
77.4
31.3
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
49.2
-0
2.2
67.66
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007941
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008240
10081515 - 10088252
6738