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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10083976_10085275_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10083976 - 10085275
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
TGTTTCTTCACA
Flanking Amino Acid:
WTEQERTAVQTKLLSANKPE
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
69.5
0.61
1.7
79.59
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007941
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008240
10081515 - 10088252
6738