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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10088035_10088134_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10088035 - 10088134
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATGA
5'SS Class:
major
3'SS Sequence:
TTCTCCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAC
U12 Branch Point Sequence:
CCAACCTTAACA
Flanking Amino Acid:
EKKKVLCLLPALFHRHFQPV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.2
37.6
Major BPS
61.1
0.28
1.1
69.4
35.9
Major PPT
81
0.7
0.7
73.1
31.7
Minor 5ss
43.5
-0.7
2.8
57
47.1
Minor BPS
69.6
0.61
1.4
68.93
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007941
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008240
10081515 - 10088252
6738