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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10306625_10307921_F

Intron Information:

Intron Rank:
135939
Intron Class:
major
Intron Phase:
Intron Coordinates:
10306625 - 10307921
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CGATCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTCCTCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
71
0.47
0.9
62.2
39.6
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
60.8
0.32
1.4
68.18
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023203
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046026
10305708 - 10309050
3343