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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10329713_10331488_R

Intron Information:

Intron Rank:
148367
Intron Class:
major
Intron Phase:
Intron Coordinates:
10329713 - 10331488
Intron Length:
1776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
AACATTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TCCTCCCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
68.4
0.41
1
58
46.5
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
55.1
0.16
1.9
68.3
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027206
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026418
10329599 - 10342908
13310