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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10331681_10331866_R

Intron Information:

Intron Rank:
148368
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10331681 - 10331866
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCCCTCA
5'SS Class:
weak_major
3'SS Sequence:
TGACTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGCTTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.5
50.6
43.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
44
-0.6
2.9
58
46.1
Minor BPS
60.8
0.32
1.5
66.75
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027206
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026418
10329599 - 10342908
13310