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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10474217_10474304_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10474217 - 10474304
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
GTCTGTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGTCCACTGATG
Flanking Amino Acid:
SLQLVAQMTSEDLLRIGVTL
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
40.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78.6
0.64
0.9
69.2
41.8
Minor 5ss
35.8
-1.6
2.8
39.3
39.7
Minor BPS
45.6
-0.4
2
55.24
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005830
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040630
10474108 - 10498759
24652
ENSAPLT00000034231
10474108 - 10498672
24565
ENSAPLT00000026539
10474108 - 10499094
24987
ENSAPLT00000006130
10474108 - 10499094
24987