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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10475376_10476842_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10475376 - 10476842
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACCA
Flanking Amino Acid:
TSDPTYTSSLGGKIPVRWTA
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.7
0.58
1
72.8
37.5
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
43.7
-0.4
2.2
53.03
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005830
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024625
10474301 - 10498672
24372
ENSAPLT00000006130
10474108 - 10499094
24987
ENSAPLT00000040630
10474108 - 10498759
24652
ENSAPLT00000034231
10474108 - 10498672
24565
ENSAPLT00000026539
10474108 - 10499094
24987