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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10480808_10481002_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10480808 - 10481002
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CACTGCTCACGC
Flanking Amino Acid:
SLVAISIVCSRKRAYSKEAV
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
37.8
-0.9
2.2
42.81
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005830
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006130
10474108 - 10499094
24987