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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10481083_10483265_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10481083 - 10483265
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCCGGGGTG
5'SS Class:
major
3'SS Sequence:
GCTGAGGGAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
ATGACTACAAAT
Flanking Amino Acid:
FQTLTDGERVLPLIAGSAAA
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
62.5
39.2
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
48.6
-0
1.2
39.2
43.3
Minor 5ss
16.7
-3.8
4.1
25
38.6
Minor BPS
44.6
-0.3
1.8
61.99
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005830
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034231
10474108 - 10498672
24565