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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10496412_10498615_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10496412 - 10498615
Intron Length:
2204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTCCCCCTCACG
Flanking Amino Acid:
LGWTANPPSGWEEVSGYDEN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
74.9
0.56
0.9
70.7
33.5
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
46
-0.4
2.2
53.29
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005830
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026539
10474108 - 10499094
24987
ENSAPLT00000024625
10474301 - 10498672
24372
ENSAPLT00000017594
10491296 - 10502673
11378
ENSAPLT00000040630
10474108 - 10498759
24652
ENSAPLT00000006130
10474108 - 10499094
24987
ENSAPLT00000034231
10474108 - 10498672
24565